Changes between Version 55 and Version 56 of SOPs/rna-seq-diff-expressions

Timestamp:

12/18/17 09:44:38 (7 years ago)

Author:

thiruvil

Comment:

--

SOPs/rna-seq-diff-expressions

@@ -164 +164 @@
        * [http://www.bioconductor.org/packages/release/bioc/html/NOISeq.html NOISeq] ([wiki:SOPs/rna-seq-diff-expressions/NOISeq more detail])
       * In our hands, all of these methods appear to work fine.  Note, however, that the scale of the p-values from baySeq are much different from those of DESeq and edgeR.  For example, a gene may have a baySeq p-value of 1e-15 but a DESeq p-value of 1e-300.
+      * Technical replicates can be collapsed (eg. summed or use  collapseReplicates()in DESeq2)
+
     * Scripts with sample code are in the BaRC code repository at \\wi-files1\BaRC_Public\BaRC_code\R (and see the vignettes in the R packages linked above).
+    
 
   * **Identifying differentially expressed genes**