Changes between Version 57 and Version 58 of SOPs/rna-seq-diff-expressions


Ignore:
Timestamp:
02/20/18 13:11:16 (7 years ago)
Author:
gbell
Comment:

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  • SOPs/rna-seq-diff-expressions

    v57 v58  
    176176
    177177 * **Accounting for a batch effect in a differential expression model**
     178    * With [[https://bioconductor.org/packages/release/bioc/html/DESeq2.html|DESeq2]], the comparison can be adjusted for differences between batches (such as date of sample preparation) with an additive model formula using an equation like
     179     '''dds = DESeqDataSet(se, design = ~ batch + condition)'''.
    178180    * With [[http://www.bioconductor.org/packages/release/bioc/html/edgeR.html|edgeR]], the comparison can be adjusted for differences between batches (such as date of sample preparation) with an additive model formula using an equation like
    179181