Changes between Version 64 and Version 65 of SOPs/rna-seq-diff-expressions

Timestamp:

10/21/24 16:59:47 (3 months ago)

Author:

ibarrasa

Comment:

--

SOPs/rna-seq-diff-expressions

@@ -39 +39 @@
       * featureCounts is much faster than htseq-count, but the details of its counting method is quite different from that of htseq-count, especially for paired-end reads
       * See [[http://www.ncbi.nlm.nih.gov/pubmed/24227677|Liao et al., 2014]] for details of the method (and comparisons with other counting tools)
-      * featureCounts needs the paired-read BAM file to be sorted by read ID, but if it isn't, it'll do the sorting.
+      * For Paired-end reads featureCounts will sort the paired-read BAM file by read ID unless you provide a BAM file already be sorted by read ID.
       * Sample commands:
 {{{