Changes between Version 5 and Version 6 of SOPs/rna-seq-diff-expressions_TE


Ignore:
Timestamp:
02/24/21 20:39:46 (4 years ago)
Author:
twhitfie
Comment:

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Legend:

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  • SOPs/rna-seq-diff-expressions_TE

    v5 v6  
    4040 * **Alternative software**
    4141   * [https://github.com/nerettilab/RepEnrich2 RepEnrich2]
    42       * [[https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-583|Transcriptional landscape of repetitive elements in normal and cancer human cells]] - Steven W Criscione, Yue Zhang, William Thompson, John M Sedivy & Nicola Neretti ''BMC Genomics'' '''15''', 583 (2014).
     42      * Steven W Criscione, Yue Zhang, William Thompson, John M Sedivy & Nicola Neretti [[https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-583|Transcriptional landscape of repetitive elements in normal and cancer human cells]], ''BMC Genomics'' '''15''', 583 (2014).
    4343   * [http://research-pub.gene.com/REdiscoverTEpaper/software/ REdiscoverTE]:
    44       * [[https://www.nature.com/articles/s41467-019-13035-2|Transposable element expression in tumors is associated with immune infiltration and increased antigenicity]] -  Yu Kong, Christopher M. Rose, Ashley A. Cass, Alexander G. Williams, Martine Darwish, Steve Lianoglou, Peter M. Haverty, Ann-Jay Tong, Craig Blanchette, Matthew L. Albert, Ira Mellman, Richard Bourgon, John Greally, Suchit Jhunjhunwala & Haiyin Chen-Harris ''Nature Communications'' '''10''', 5228 (2019).
     44      * Yu Kong, Christopher M. Rose, Ashley A. Cass, Alexander G. Williams, Martine Darwish, Steve Lianoglou, Peter M. Haverty, Ann-Jay Tong, Craig Blanchette, Matthew L. Albert, Ira Mellman, Richard Bourgon, John Greally, Suchit Jhunjhunwala & Haiyin Chen-Harris [[https://www.nature.com/articles/s41467-019-13035-2|Transposable element expression in tumors is associated with immune infiltration and increased antigenicity]], ''Nature Communications'' '''10''', 5228 (2019).
    4545