Changes between Version 2 and Version 3 of SOPs/submittingSequencingToGEO


Ignore:
Timestamp:
03/04/22 13:34:23 (3 years ago)
Author:
gbell
Comment:

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  • SOPs/submittingSequencingToGEO

    v2 v3  
    77BaRC can help prepare the files and perform the GEO submission or we can help you do it yourself.
    88
    9 The best ways to start is to [[https://www.ncbi.nlm.nih.gov/geo/info/examples/seq_template.xlsx | Download the metadata spreadsheet (template and examples)]] and start to fill out the description of your experiment and the samples that comprise it.  Explain everything clearly enough so that people can understand an overview of your experiment from the GEO page, without having to read all of your publication.  Spelling out words, avoiding acronyms, and using clear nomenclature will be a big help to others who might want to access your data. If BaRC is helping you with the file submission, they can fill out the bottom part of the spreadsheet.
     9The best ways to start is to [[https://www.ncbi.nlm.nih.gov/geo/info/examples/seq_template.xlsx | Download the metadata spreadsheet (template and examples)]] and start to fill out the description of your experiment and the samples that comprise it.  Explain everything clearly enough so that people can understand an overview of your experiment (and each sample) from the GEO page, without having to read all of your publication.  Spelling out words, avoiding acronyms, and using clear nomenclature will be a big help to others who might want to access your data. If BaRC is helping you with the file submission, they can fill out the bottom part of the spreadsheet.
    1010
    1111You or BaRC will need to assemble all of your sequencing (fastq.gz) files and summary files (which will depend on the type of experiment).  If some of your samples weren't analyzed for the publication, you'll want to decide whether you want to make them public or not.