Changes between Version 13 and Version 14 of SOPs/variant_calling


Ignore:
Timestamp:
12/16/15 11:32:58 (9 years ago)
Author:
gbell
Comment:

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  • SOPs/variant_calling

    v13 v14  
    77* adding filters (really more like 'tagging' to identify raw variants that are really variants and not technical errors) and some annotations to variants
    88* annotating effect(s) of variants on genes (like if they change protein sequence)
     9
     10Which mapper and variant caller works best?  No simple answer, but see
     11* [http://www.ncbi.nlm.nih.gov/pubmed/26639839 Hwang at al., 2015. Systematic comparison of variant calling pipelines using gold standard personal exome variants.]
     12
    913
    1014== Map short reads ==