Changes between Version 14 and Version 15 of SOPs/variant_calling


Ignore:
Timestamp:
12/16/15 11:48:54 (9 years ago)
Author:
gbell
Comment:

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  • SOPs/variant_calling

    v14 v15  
    88* annotating effect(s) of variants on genes (like if they change protein sequence)
    99
    10 Which mapper and variant caller works best?  No simple answer, but see
     10Which mapper and variant caller works best?  No simple answer (of course), but see
    1111* [http://www.ncbi.nlm.nih.gov/pubmed/26639839 Hwang at al., 2015. Systematic comparison of variant calling pipelines using gold standard personal exome variants.]
    12 
     12* [http://www.ncbi.nlm.nih.gov/pubmed/25078893 Pirooznia et al., 2014. Validation and assessment of variant calling pipelines for next-generation sequencing.]
     13* [http://www.ncbi.nlm.nih.gov/pubmed/24086590 Liu et al., 2013. Variant callers for next-generation sequencing data: a comparison study.]
    1314
    1415== Map short reads ==