Changes between Version 20 and Version 21 of SOPs/variant_calling


Ignore:
Timestamp:
07/18/17 08:17:29 (8 years ago)
Author:
gbell
Comment:

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  • SOPs/variant_calling

    v20 v21  
    1212* [http://www.ncbi.nlm.nih.gov/pubmed/25078893 Pirooznia et al., 2014. Validation and assessment of variant calling pipelines for next-generation sequencing.]
    1313* [http://www.ncbi.nlm.nih.gov/pubmed/24086590 Liu et al., 2013. Variant callers for next-generation sequencing data: a comparison study.]
     14* Note: GATK is optimized for large human datasets, whereas GATK and samtools may perform similarly with other species and smaller-scale experiments.
    1415
    1516== Map short reads ==