Changes between Version 21 and Version 22 of SOPs/variant_calling


Ignore:
Timestamp:
08/07/17 13:16:00 (8 years ago)
Author:
thiruvil
Comment:

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Legend:

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  • SOPs/variant_calling

    v21 v22  
    2525Single reads with bwa:
    2626{{{
     27#assuming the index file name is sacCer3.fa: use the name that was used when creating the index
    2728bwa aln /nfs/genomes/sgd_2010/bwa/sacCer3.fa A_reads.fq > A_reads.sai
    2829bwa samse /nfs/genomes/sgd_2010/bwa/sacCer3.fa A_reads.sai  A_reads.fq > A_reads.bwa.sam