Changes between Version 24 and Version 25 of SOPs/variant_calling


Ignore:
Timestamp:
09/13/18 10:55:18 (6 years ago)
Author:
gbell
Comment:

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Legend:

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  • SOPs/variant_calling

    v24 v25  
    4747Get uniquely mapping reads (Is this recommended or not?)
    4848{{{
    49 samtools view -h A_reads.bt2.bam | grep -v XS:i: | samtools view -bS - > A_reads.bt2.sorted_unique.bam
     49bsub samtools view -b -q 5 -o A_reads.bt2.unique.bam A_reads.bt2.bam
    5050}}}
    5151