Changes between Version 34 and Version 35 of SOPs/variant_calling


Ignore:
Timestamp:
10/30/25 16:10:26 (4 days ago)
Author:
kdesilva
Comment:

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Legend:

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  • SOPs/variant_calling

    v34 v35  
    4747Get uniquely mapping reads (Is this recommended or not?)
    4848{{{
    49 bsub samtools view -b -q 5 -o A_reads.bt2.unique.bam A_reads.bt2.bam
     49sbatch --job-name=samtools_view --mem=4G --wrap="samtools view -b -q 5 -o A_reads.bt2.unique.bam A_reads.bt2.bam"
    5050}}}
    5151