Changes between Version 8 and Version 9 of SOPs/variant_calling


Ignore:
Timestamp:
02/07/14 15:44:34 (11 years ago)
Author:
gbell
Comment:

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  • SOPs/variant_calling

    v8 v9  
    6969Annotate variants by adding tags ("filters" but all variants are kept) to each variant, using all default filters.
    7070{{{
    71 bcftools view -L -vcg A_reads.bt2.sorted_unique.raw.bcf | vcf-annotate -f + > A_reads.bt2.sorted_unique.withTags.bcf
     71bcftools view -L -vcg A_reads.bt2.sorted_unique.raw.bcf | vcf-annotate -f + > A_reads.bt2.sorted_unique.withTags.vcf
    7272}}}
    7373