Changes between Version 18 and Version 19 of SOPs/variant_calling_GATK


Ignore:
Timestamp:
12/16/15 11:49:33 (9 years ago)
Author:
gbell
Comment:

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  • SOPs/variant_calling_GATK

    v18 v19  
    11=== Which mapper and variant caller works best? ===
    22
    3 No simple answer, but see
     3No simple answer (of course), but see
    44* [http://www.ncbi.nlm.nih.gov/pubmed/26639839 Hwang at al., 2015. Systematic comparison of variant calling pipelines using gold standard personal exome variants.]
     5* [http://www.ncbi.nlm.nih.gov/pubmed/25078893 Pirooznia et al., 2014. Validation and assessment of variant calling pipelines for next-generation sequencing.]
     6* [http://www.ncbi.nlm.nih.gov/pubmed/24086590 Liu et al., 2013. Variant callers for next-generation sequencing data: a comparison study.]
     7
    58
    69== Using GATK to call variants from short-read sequencing ==