Changes between Version 23 and Version 24 of SOPs/variant_calling_GATK


Ignore:
Timestamp:
07/18/17 09:00:04 (8 years ago)
Author:
gbell
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • SOPs/variant_calling_GATK

    v23 v24  
    55* [http://www.ncbi.nlm.nih.gov/pubmed/25078893 Pirooznia et al., 2014. Validation and assessment of variant calling pipelines for next-generation sequencing.]
    66* [http://www.ncbi.nlm.nih.gov/pubmed/24086590 Liu et al., 2013. Variant callers for next-generation sequencing data: a comparison study.]
    7 
     7* Note: GATK is optimized for large human datasets, whereas GATK and samtools may perform similarly with other species and smaller-scale experiments.
    88
    99== Using GATK to call variants from short-read sequencing ==