Changes between Version 15 and Version 16 of SOPs/vcf


Ignore:
Timestamp:
03/13/14 09:58:52 (11 years ago)
Author:
gbell
Comment:

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  • SOPs/vcf

    v15 v16  
    6868|| DV || Number of high-quality non-reference bases || ||
    6969|| SP || Phred-scaled strand bias P-value || ||
    70 || PL || List of Phred-scaled genotype likelihoods || Scores for 0/0 (homozygous ref), 0/1 (heterozygous), and 1/1 (homozygous alt) genotypes.  For a score of Z, the probability of that genotype is '''10^-Z/10^''' (so the higher the number, the less likely it is that your sample is that genotype). ||
     70|| PL || List of Phred-scaled genotype likelihoods || Scores for 0/0 (homozygous ref), 0/1 (heterozygous), and 1/1 (homozygous alt) genotypes.  For a phred-scaled likelihood of P, the raw likelihood of that genotype L = ''10^-P/10^'' (so the higher the number, the less likely it is that your sample is that genotype). ||
    7171
    7272== Predicting the effects of a set of variants ==