Changes between Version 18 and Version 19 of SOPs/vcf


Ignore:
Timestamp:
07/27/16 11:43:05 (9 years ago)
Author:
thiruvil
Comment:

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  • SOPs/vcf

    v18 v19  
    8989== Other Analysis ==
    9090
    91 * Assess Hardy-Weinberg Equilibrium (HWE) using an exact test,
     91* Assess Hardy-Weinberg Equilibrium (HWE) using an exact test, deviation from HWE may indicate selection, population mixing or non-random mating, see [[http://www.ncbi.nlm.nih.gov/pubmed/7498780 | PMID 7498780 ]] for more details.
    9292  * Use [[https://vcftools.github.io/index.html | vcftools]] option "--hardy" to report a p-value for each site to assess deviation from HWE.  VCF file must have genotypes of individuals explicitly reported.
    9393{{{