Changes between Version 21 and Version 22 of SOPs/vcf


Ignore:
Timestamp:
07/29/16 10:19:38 (8 years ago)
Author:
thiruvil
Comment:

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  • SOPs/vcf

    v21 v22  
    8989== Other Analysis ==
    9090
    91 * Assessing Hardy-Weinberg Equilibrium (HWE) using an exact test, deviation from HWE may indicate selection, population mixing or non-random mating, see [[http://www.ncbi.nlm.nih.gov/pubmed/7498780 | PMID 7498780 ]] for more details.
     91* Assessing Hardy-Weinberg Equilibrium (HWE) using an exact test, deviation from HWE may indicate selection, population mixing or non-random mating, see [[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1199378 | PMID 7498780 ]] for more details.
    9292  * Use [[https://vcftools.github.io/index.html | vcftools]] option "--hardy" to report a p-value for each site to assess deviation from HWE. 
    9393{{{