Changes between Version 3 and Version 4 of SOPs/vcf


Ignore:
Timestamp:
10/16/13 13:29:25 (11 years ago)
Author:
gbell
Comment:

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  • SOPs/vcf

    v3 v4  
    44
    55Tags in the FILTER, INFO, and FORMAT fields are described in the VCF header.
     6
     7Phred probability for a probability P is defined as '''-10*log10(P)'''
    68
    79As a tabular reference, common tags are as follows:
    … …  
    3335||CGT || The most probable constrained genotype configuration in the trio ||  ||
    3436||CLR || Log ratio of genotype likelihoods with and without the constraint ||  ||
    35 ||DP || Raw read depth || ||
     37||DP || Raw read depth || For multiple-sample VCFs, the sum for all samples ||
    3638||DP4 || # high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases ||  ||
    3739||FQ || Phred probability of all samples being the same ||  ||