Changes between Version 7 and Version 8 of SOPs/vcf


Ignore:
Timestamp:
10/16/13 16:24:46 (11 years ago)
Author:
gbell
Comment:

--

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  • SOPs/vcf

    v7 v8  
    5959||VDB || Variant Distance Bias (v2) for filtering splice-site artefacts in RNA-seq data. ||  ||
    6060
     61'''FORMAT''' field (listing tags of metrics for each sample):
     62
     63||'''Tag''' || '''Description''' || '''More details''' ||
     64|| GT || Genotype || ||
     65|| GQ || Genotype Quality || ||
     66|| GL || Likelihoods for RR,RA,AA genotypes (R=ref,A=alt) || ||
     67|| DP || Number of high-quality bases || ||
     68|| DV || Number of high-quality non-reference bases || ||
     69|| SP || Phred-scaled strand bias P-value || ||
     70|| PL || List of Phred-scaled genotype likelihoods || ||