Changes between Version 12 and Version 13 of SOPs/vcf_manipulation


Ignore:
Timestamp:
07/18/17 08:32:40 (8 years ago)
Author:
gbell
Comment:

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  • SOPs/vcf_manipulation

    v12 v13  
    3232}}}
    3333
    34 Annotate a VCF file using [http://vcftools.sourceforge.net/perl_module.html#vcf-annotate vcf-annotate]
     34Annotate a VCF file using [https://vcftools.github.io/perl_module.html#vcf-annotate vcf-annotate]
    3535{{{
    3636# Apply all filters with default values:
    … …  
    4343
    4444For the last command, My_filters.txt contains a filter (such as an example one that calculates PLdiff values for 1/1 - 0/0 and 1/1 - 0/1, making sure that each difference is greater than 20).  In this case, the filter is designed for selection, rather than filtering out. [[BR]]
    45 For more examples, go to [http://vcftools.sourceforge.net/perl_module.html#vcf-annotate vcf-annotate] and click on "Read even more".
     45For more examples, go to [https://vcftools.github.io/perl_module.html#vcf-annotate vcf-annotate] and click on "Read even more".
    4646{{{
    4747{