Changes between Version 15 and Version 16 of SOPs/vcf_manipulation


Ignore:
Timestamp:
03/17/23 10:31:02 (14 months ago)
Author:
gbell
Comment:

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  • SOPs/vcf_manipulation

    v15 v16  
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    101 Extract fields from a VCF file to a TXT, tab separated format with the [http://snpeff.sourceforge.net/SnpSift.html#Extract snpSift extractFields] function
     101Extract fields from a VCF file to a text, tab-separated format with the [http://snpeff.sourceforge.net/SnpSift.html#Extract snpSift extractFields] function
    102102{{{
    103103# Extract chromosome, position, reference base(s), alternate bases(s), all the samples' ADF and ADR (number of high-quality ref-fwd, alt-fwd, ref-reverse, and alt-reverse bases):
    … …  
    108108}}}
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    110 Extract fields from a VCF file to a TXT, tab separated file with the [https://samtools.github.io/bcftools/howtos/query.html bcftools query] function
     110Extract fields from a VCF file to a text, tab-separated file with the [https://samtools.github.io/bcftools/howtos/query.html bcftools query] function
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    112112{{{