Changes between Version 2 and Version 3 of SOPs/vcf_manipulation


Ignore:
Timestamp:
10/16/13 10:19:14 (11 years ago)
Author:
gbell
Comment:

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  • SOPs/vcf_manipulation

    v2 v3  
    44* samtools' mpileup+bcftools:
    55{{{
     6# One file of mapped reads
    67samtools mpileup -uf indexed_genome My_mapped_reads.bam | bcftools view -bvcg - >| My_mapped_reads.raw.bcf
     8# Multiple files of mapped reads
    79samtools mpileup -uf indexed_genome *.bam | bcftools view -bvcg - >| Multiple_samples.raw.bcf
    810}}}