Changes between Version 4 and Version 5 of SOPs/vcf_manipulation


Ignore:
Timestamp:
01/10/14 15:10:45 (11 years ago)
Author:
gbell
Comment:

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  • SOPs/vcf_manipulation

    v4 v5  
    4242}}}
    4343
     44Validate VCF file (for use with GATK, for example)
     45{{{
     46java -jar /usr/local/gatk/GenomeAnalysisTK.jar -T ValidateVariants -R /path/to/indexed/genome --variant:VCF SNPs.vcf
     47}}}