Changes between Version 53 and Version 54 of SOPs


Ignore:
Timestamp:
11/17/20 14:13:48 (4 years ago)
Author:
gbell
Comment:

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  • SOPs

    v53 v54  
    77[[br]] [[br]]
    88
    9 === Analysis of short read sequencing ===
     9=== General short-read sequencing ===
    1010
    1111* [wiki:SOPs/qc_SRA Downloading and processing NCBI SRA files][[br]] [[br]]
    … …  
    1414* [wiki:SOPs/miningSAMBAM SAM/BAM summarizing and processing][[br]] [[br]]
    1515* [wiki:SOPs/SAMBAMqc SAM/BAM quality control][[br]] [[br]]
     16* [wiki:SOPs/geneFeatureHeatmaps Creating genome feature heatmaps from sequencing experiments][[br]] [[br]]
     17* [wiki:SOPs/gzipping Creating an analysis pipeline of compressed files][[br]] [[br]]
     18* [wiki:SOPs/ShortReadExpDesign Experimental design of short read sequencing experiments][[br]] [[br]]
     19=== Specific types of short-read sequencing experiments ===
     20
    1621* [wiki:SOPs/rna-seq-diff-expressions Using RNA-Seq to quantify gene levels and assay for differential expression][[br]][[br]]
    1722* [wiki:SOPs/AssemblingRNAseqReads Using RNA-Seq to assemble or annotate transcripts ][[br]] [[br]]
    … …  
    1924* [wiki:SOPs/atac_Seq Using ATAC-Seq to identify open chromatin ][[br]] [[br]]
    2025* [wiki:SOPs/integrateExpressionIP Integrating expression and immunoprecipitation experiments][[br]] [[br]]
    21 * [wiki:SOPs/geneFeatureHeatmaps Creating genome feature heatmaps from sequencing experiments][[br]] [[br]]
    22 * [wiki:SOPs/gzipping Creating an analysis pipeline of compressed files][[br]] [[br]]
    23 * [wiki:SOPs/ShortReadExpDesign Experimental design of short read sequencing experiments][[br]] [[br]]
     26
    2427
    2528=== Single-cell genomics ===