Changes between Version 11 and Version 12 of SOPs/SAMBAMqc


Ignore:
Timestamp:
06/15/16 13:46:25 (9 years ago)
Author:
gbell
Comment:

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  • SOPs/SAMBAMqc

    v11 v12  
    100100{{{
    101101bam_stat.py -i myFile.bam
     102# Or run on a folder of BAMs
     103for bamFile in `/bin/ls *.bam`; do bsub -e $bamFile.bam_stat.txt bam_stat.py -i $bamFile ; done
    102104}}}
    103105==== infer_experiment.py from RseQC package: Check if/how your RNA-seq reads are stranded. ====