Changes between Version 13 and Version 14 of SOPs/SAMBAMqc


Ignore:
Timestamp:
08/17/16 13:21:05 (8 years ago)
Author:
gbell
Comment:

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  • SOPs/SAMBAMqc

    v13 v14  
    101101bam_stat.py -i myFile.bam
    102102# Or run on a folder of BAMs
    103 for bamFile in `/bin/ls *.bam`; do bsub -e $bamFile.bam_stat.txt bam_stat.py -i $bamFile ; done
     103for bamFile in `/bin/ls *.bam`; do bsub "bam_stat.py -i $bamFile > $bamFile.bam_stat.txt"; done
    104104}}}
    105105==== infer_experiment.py from RseQC package: Check if/how your RNA-seq reads are stranded. ====