Changes between Version 16 and Version 17 of SOPs/SAMBAMqc

Timestamp:

02/03/17 15:30:55 (8 years ago)

Author:

thiruvil

Comment:

--

SOPs/SAMBAMqc

@@ -139 +139 @@
 # For gene counting with htseq-count, use --stranded=no; mapping with TopHat should have been performed with --library-type=fr-unstranded.
 
+#sample output on stranded SE reads:
+This is SingleEnd Data
+Fraction of reads failed to determine: 0.0068
+Fraction of reads explained by "++,--": 0.0068
+Fraction of reads explained by "+-,-+": 0.9865
+# For gene counting with htseq-count, use --stranded=reverse; mapping with TopHat should have been performed with --library-type=fr-firststrand.
+
+
 For pair-end RNA-seq, there are two different ways to strand reads:
   i) 1++,1--,2+-,2-+