Changes between Version 17 and Version 18 of SOPs/SAMBAMqc


Ignore:
Timestamp:
02/03/17 15:40:23 (8 years ago)
Author:
ibarrasa
Comment:

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  • SOPs/SAMBAMqc

    v17 v18  
    138138Fraction of reads explained by other combinations: 0.0000
    139139# For gene counting with htseq-count, use --stranded=no; mapping with TopHat should have been performed with --library-type=fr-unstranded.
     140
     141#sample output on stranded SE reads:
     142This is SingleEnd Data
     143Fraction of reads failed to determine: 0.0068
     144Fraction of reads explained by "++,--": 0.9865
     145Fraction of reads explained by "+-,-+": 0.0068
     146# For gene counting with htseq-count, use --stranded=yes; mapping with TopHat should have been performed with --library-type=fr-secondstrand.
     147
    140148
    141149#sample output on stranded SE reads: