Changes between Version 25 and Version 26 of SOPs/qc_shortReads


Ignore:
Timestamp:
06/14/16 09:10:11 (9 years ago)
Author:
gbell
Comment:

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  • SOPs/qc_shortReads

    v25 v26  
    3838
    3939{{{
    40    bsub “/nfs/BaRC_Public/BaRC_code/Perl/cmpfastq/cmpfastq.pl s_8_1_sequence.txt s_8_2_sequence.txt”  # fastq inputs
     40   bsub "/nfs/BaRC_Public/BaRC_code/Perl/cmpfastq/cmpfastq.pl s_8_1_sequence.txt s_8_2_sequence.txt"  # fastq inputs
    4141}}}
    4242
    … …  
    154154
    155155    {{{
    156     bsub cutadapt -a GATCGGAAGAGCTCGTATGCCGTCTT –o Nanog_noAdapter.fastq Nanog.fastq
     156    bsub cutadapt -a GATCGGAAGAGCTCGTATGCCGTCTT -o Nanog_noAdapter.fastq Nanog.fastq
    157157
    158158    In the above command: