Changes between Version 26 and Version 27 of SOPs/qc_shortReads

Timestamp:

08/17/16 09:47:40 (8 years ago)

Author:

gbell

Comment:

--

SOPs/qc_shortReads

@@ -93 +93 @@
 {{{
   fastq_quality_filter -v -q 20 -p 75 -i myFile.fastq -o myFile.fastq.fastx_trim  # fastq input and output
-  gunzip -c myFile.fastq | fastq_quality_filter -v -q 20 -p 75 -z -o myFile.fastq.fastx_trim.gz  # fastq.gz input and output
+  gunzip -c myFile.fq.gz | fastq_quality_filter -v -q 20 -p 75 -z -o myFile.fastq.fastx_trim.gz  # fastq.gz input and output
 
            [-h]         = This helpful help screen.