Changes between Version 37 and Version 38 of SOPs/qc_shortReads


Ignore:
Timestamp:
04/26/17 12:03:26 (8 years ago)
Author:
thiruvil
Comment:

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  • SOPs/qc_shortReads

    v37 v38  
    140140prinseq-graphs.pl -i file.gd -html_all -o prinseq_outFile
    141141
    142 #remove exact duplicates (drep=1) to a new fastq file
     142#remove exact duplicates (drep=1) and create a new fastq file (of unique sequences)
    143143prinseq-lite.pl -fastq myFile.fastq -derep 1 -out_good myFile.unique.fq -out_bad myFile.dup.fastq
    144144