Changes between Version 58 and Version 59 of SOPs/qc_shortReads

Timestamp:

12/18/20 11:06:28 (4 years ago)

Author:

gbell

Comment:

--

SOPs/qc_shortReads

@@ -246 +246 @@
        * To remove Illumina TruSeq adapters (from the [[https://cutadapt.readthedocs.io/en/stable/guide.html|cutadapt user guide]]):
 {{{
-cutadapt -a AGATCGGAAGAGC -A AGATCGGAAGAGC -o trimmed.1.fastq.gz -p trimmed.2.fastq.gz reads.1.fastq.gz reads.2.fastq.gz
+cutadapt -a AGATCGGAAGAGC -A AGATCGGAAGAGC -o trimmed.1.fq.gz -p trimmed.2.fq.gz reads.1.fq.gz reads.2.fq.gz
 }}}