Changes between Version 60 and Version 61 of SOPs/qc_shortReads

Timestamp:

05/19/22 14:17:34 (3 years ago)

Author:

twhitfie

Comment:

--

SOPs/qc_shortReads

@@ -257 +257 @@
 # Usage (paired-end reads; discard pair if at least one read is too short):
 trim_galore --paired --phred64 --fastqc  -o my_trimmed_reads raw_reads/My_reads_1.fq.gz raw_reads/My_reads_2.fq.gz
+# Usage (paired-end reads, reduced-representation bisulfite sequencing (RRBS) data, default phred33 quality scores):
+trim_galore --paired --rrbs --fastqc  -o my_trimmed_reads raw_reads/My_reads_1.fq.gz raw_reads/My_reads_2.fq.gz
 # Get all options
 trim_galore --help