Changes between Version 66 and Version 67 of SOPs/qc_shortReads


Ignore:
Timestamp:
10/28/25 15:21:34 (6 days ago)
Author:
kdesilva
Comment:

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  • SOPs/qc_shortReads

    v66 v67  
    238238
    239239    # paired-end reads
    240     ssbatch --partition=20 --job-name=cutdapt --mem=16G --wrap "cutadapt -a GATCGGAAGAGCTCGTATGCCGTCTT -o Reads_trimmed.1.fq -p Reads_trimmed.2.fq Reads.1.fq Reads.2.fq"
     240    sbatch --partition=20 --job-name=cutdapt --mem=16G --wrap "cutadapt -a GATCGGAAGAGCTCGTATGCCGTCTT -o Reads_trimmed.1.fq -p Reads_trimmed.2.fq Reads.1.fq Reads.2.fq"
    241241
    242242    # use --quality-base=64 option for Phred+64 (Illumina 1.5)