Changes between Version 27 and Version 28 of SOPs/SAMBAMqc

Timestamp:

08/20/20 11:07:02 (4 years ago)

Author:

gbell

Comment:

--

SOPs/SAMBAMqc

@@ -78 +78 @@
 
 # Full command on the command line:
-unset DISPLAY  #needed for submitting to cluster
+# Before submitting to cluster
+unset DISPLAY  
 bsub "qualimap bamqc -bam myFile.bam -outdir output_qualimap"
 # For huge data, you can increase memory with --java-mem-size="4800M" to avoid OutOfMemoryError: Java heap space
@@ -96 +97 @@
 N83     N8      totalCounts.txt 7
 }}}
-
-
 
 ==== [http://rseqc.sourceforge.net/ RSeQC] is a RNA-Seq quality control package for getting mapping statistics (eg. unique/multi-mapped reads) ====